miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Daphnia pulex



ABOUT THIS RECORD

ID: MNEST035001
species: Daphnia pulex
miRNA family: mir-10
source: miRBase, original name: dpu-mir-10 (MI0012217)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACCCTGTAGATCCGAATTTGT

miRNA*
AAATTCGGTTCTAGAGAGGTTCG

mismatches: 3
bulges: 1

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pre-miRNA
GTTCATCATGCTCTACATCTACCCTGTAGATCCGAATTTGTAGTTGCATCACAAGACAAATTCGGTTCTAGAGAGGTTCGTGTGGGGCATAAACAGCTAC
A


dot-bracket secondary structure
(((....(((((((((((..(((((.((((.((((((((((..(((.....))).)))))))))).)))).)).)))..)))))))))))....)))...
.



SIMILARITIES
miRBase nlo-mir-10: 2e-17

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-10: 0.00000000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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